Production scientifique / Совместные публикации

Research activities:

Collaborative papers published by two or more teams participating in the GDRI:

2011

1. Razin, S.V., Gavrilov, A.A., Pichugin, A., Lipinski, M., Iarovaia, O.V. and VASSETZKY, Y.S. (2011) Transcription factories in the context of the nuclear and genome organization. Nucl. Acids. Res., 1–8 doi:10.1093/nar/gkr683
2. Rubtsov, M.A., Allinne, J., Pichugin, A.,VASSETZKY, Y.S., Razin, S.V., and Iarovaia, O.V. (2011) Treatment of lymphoid cells with the topoisomerase II poison etoposide leads to an increased juxtaposition of AML1 and ETO genes on the surface of nucleoli. Biopolymers and cell, in press.
3. Sjakste, N., Bagdoniene, L., Gutcaits, A., Labeikyte, D., Bielskene, K., Trapina I., Muiznieks, I., VASSETZKY, Y., Sjakste, T. (2011) Proteins Tightly Bound to DNA. Gene, doi:10.1016/j.gene.2011.09.019.
4. Ioudinkova, E.S., Barat, A., Pichugin, A., Markova, E., Pirozhkova, I., Robin, C., Lipinski, M., Ogryzko, V., VASSETZKY*, Y.S. and Razin, S.V. (2011) Distinct distribution of histone variants H2A.Bbd and macroH2A in open and closed chromatin domains. BMC Genomics,

5.Smirnov I, Carletti E, Kurkova I, Nachon F, Nicolet Y, Mitkevich VA, Débat H, Avalle B, Belogurov AA Jr, Kuznetsov N, Reshetnyak A, Masson P, Tonevitsky AG, Ponomarenko N, Makarov AA, Friboulet A, Tramontano A, Gabibov A. (2011) Reactibodies generated by kinetic selection couple chemical reactivity with favorable protein dynamics. Proc Natl Acad Sci U S A. 108(38):15954-9
6.Gabibov AG, Belogurov AA Jr, Lomakin YA, Zakharova MY, Avakyan ME, Dubrovskaya VV, Smirnov IV, Ivanov AS, Molnar AA, Gurtsevitch VE, Diduk SV, Smirnova KV, Avalle B, Sharanova SN, Tramontano A, Friboulet A, Boyko AN, Ponomarenko NA, Tikunova NV. (2011) Combinatorial antibody library from multiple sclerosis patients reveals antibodies that cross-react with myelin basic protein and EBV antigen. FASEB J. 2011 Aug 22. [Epub ahead of print]
7.Stepanov AV, Belogurov AA Jr, Ponomarenko NA, Stremovskiy OA, Kozlov LV, Bichucher AM, Dmitriev SE, Smirnov IV, Shamborant OG, Balabashin DS, Sashchenko LP, Tonevitsky AG, Friboulet A, Gabibov AG, Deyev SM. (2011) Design of targeted B cell killing agents.PLoS One. 2011;6(6):e20991
8.Zakharov AV, Smirnov IV, Serebriakova MV, Dronina MA, Kaznacheeva AV, Kurkova IN, Belogurov AA, Friboulet A, Ponomarenko NA, Gabibov AG, Bobik TV.(2011) Expression of the catalytic antibodies in eukaryotic systemsMol Biol (Mosk). 45(1):86-95.
9. Khaindrava V, Salin P, Melon C, Ugrumov M, Kerkerian-Le-Goff L, Daszuta A. (2011) High frequency stimulation of the subthalamic nucleus impacts adult neurogenesis in a rat model of Parkinson's disease.Neurobiol Dis. 2011 Jun;42(3):284-91
10.Abramova MA, Calas A, Ugrumov M. (2011) Vasopressinergic neurons of the supraoptic nucleus in perinatal rats: reaction to osmotic stimulation and its regulation. Brain Struct Funct. 2011 Jan;215(3-4):195-207.

2010

1. Dergai O, Novokhatska O, Dergai M, Skrypkina I, Tsyba L, Moreau J, Rynditch A. (2010) Intersectin 1 forms complexes with SGIP1 and Reps1 in clathrin-coated pits. Biochem Biophys Res Commun. 2010 Oct 12. [Epub ahead of print]
2. Havrylenko S, Legouis R, Negrutskii B, Mirande M. (2010) Methionyl-tRNA synthetase from Caenorhabditis elegans. A specific multi-domain organization for convergent functional evolution. Protein Sci. 2010 Oct 15. [Epub ahead of print]
3. Salafet OV, Ruzina ND, Ponomarenko NA, Friboulet A, Kimova MV, Shmidt TE, Gabibov AG, Morse HK, Pal'tsev MA, Suchkov SV. (2010) Diagnostic and pathogenetic implications of the site specificity of antibody proteases in multiple sclerosis. Vestn Ross Akad Med Nauk. 2010;(4):8-15.

2009

1. Iarovaia OV, Borounova V, Phylonenko E., Kantidze, O., Vassetzky, YS, Razin SV (2009) In embryonic chicken erythrocytes actively transcribed alpha globin genes are not associated with the nuclear matrix. J. Cell Biochem, 106:170-178.

2. Gavrilov A., Eivazova E. R., Pirozhkova I., Lipinski M., RazinS. V., Vassetzky Y. S. (2009) Chromosome conformation capture (3C) and its ChIP-based modifications; Methods in Molecular Biology, 567:171-188.

3. Eivazova E. R., Gavrilov A., Pirozhkova I., Petrov A., Iarovaia O.V., RazinS. V., Lipinski M., Vassetzky, Y. S. (2009) Interaction in vivo between the two matrix attachment regions flanking a single chromatin loop. J. Mol.Biol., 386: 929-937.

4. Klochkov, D.B., Gavrilov, A.V., Vassetzky, Y.S., Razin S.V. (2009) Early replication timing of the chicken α-globin gene domain correlates with its open chromatin state in cells of different lineages. Genomics, 93:481-486.

5. Kaminska M, Havrylenko S, Decottignies P, Le Marechal P, Negrutskii B, Mirande M (2009) Dynamic Organization of Aminoacyl-tRNA Synthetase Complexes in the Cytoplasm of Human Cells. J Biol Chem 284:13746-13754

6. Kaminska M, Havrylenko S, Decottignies P, Gillet S, Le Maréchal P, Negrutskii B, Mirande M (2009) Dissection of the structural organization of the aminoacyl-tRNA synthetase complex. J Biol Chem 284:6053-6060

7. Kurkova IN, Reshetnyak AV, Durova OM, Knorre VD, Tramontano A, Friboulet A, Ponomarenko NA, Gabibov AG, Smirnov IV. (2009) Antibodies-antidotes against organophosphorus compounds. Dokl Biochem Biophys. 425:94-97.

8. Durova OM, Vorobiev II, Smirnov IV, Reshetnyak AV, Telegin GB, Shamborant OG, Orlova NA, Genkin DD, Bacon A, Ponomarenko NA, Friboulet A, Gabibov AG. (2009) Strategies for induction of catalytic antibodies toward HIV-1 glycoprotein gp120 in autoimmune prone mice.Mol Immunol. 47:87-95

9.Couve-Privat, S., Mace-Aime, G., Rosselli, F. and Saparbaev, M.K. (2009) Human oxidative DNA glycosylase NEIL1 excises psoralen-induced interstrand DNA cross-links in the three-stranded DNA structure. J. Biol. Chem. 284:11963-11970.

10.Golan, G., Ishchenko, A.A., Khassenov, B., Shoham, G. and Saparbaev, M.K. (2009) Coupling of the nucleotide incision and 3'-->5' exonuclease activities in Escherichia coli endonuclease IV: Structural and genetic evidences. Mutat Res, in press

11.Chernov KG, Barbet A, Hamon L, Ovchinnikov LP, Curmi PA, Pastre D. (2009) Role of microtubules in stress granule assembly: Microtubule dynamical instability favors the formation of micrometric stress granules in cells. J Biol Chem. 2009, in press

12.Urtikova NA, Sapronova AIa, Brisorgueil MJ, Verge D, Ugriumov MV. (2009) Development of serotonergic neurons of dorsal raphe nuclei in mice with knockout of monoamine oxidase A and 5-HT1A and 5-HT1B autoreceptor. Ontogenez. 40:270-81

13. Izvolskaia M, Duittoz AH, Tillet Y, Ugrumov MV. (2009) The influence of catecholamine on the migration of gonadotropin-releasing hormone-producing neurons in the rat foetuses. Brain Struct Funct. 213:289-300

14. Boisselier B., Marie Y., El Hallani S., Kaloshi G., Iershov A., Kavsan V., Psimaras D., Thillet J., Hoang-Xuan K., Delattre J.Y., Sanson M. No association of (-131C-->G) variant of CHI3L1 gene with risk of glioblastoma and prognosis. J Neurooncol., 2009, 94:169-172.

Research grants contracted by two or more teams participating in the GDRI

- 2007-2008 : Projet de coopération franco-ukrainienne dans le cadre de l'accord CNRS/NASU (projet N° 21308) (Marc Mirande et Boris Negrutskii)

- 2009-2011 : Projet International de Coopération Scientifique (PICS N° 4763) (Marc Mirande et Boris Negrutskii).

- 2009-2011 : Projet de coopération franco-ukrainienne "Dinpro" (Vadim Kavsan et Jacques Demotes-Mainard)

- 2009-2011 : Subvention de STCU (Vadm Kavsan et Marc Sanson)
- 2010-2012 : Projet de coopération franco-russe dans le cadre de l'accord CNRS/RAS N° 23891 (Marc Lipinski et Natalia Kisseljova)